Overview
Comment:Rationalised simulation modes to each return mtt_data
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SHA3-256: 82f17ad042d15285187b321cbd0b560a754f9cf8e924fa54e13925cdbe167e2a
User & Date: gawthrop@users.sourceforge.net on 2001-03-30 15:13:58
Other Links: branch diff | manifest | tags
Context
2001-04-01
03:38:54
Reset row to zero after write to file, ready for subsequent runs.
Eliminates SIGSEGV in Octave when _ode2odes called multiple times. check-in: 73e682b20b user: geraint@users.sourceforge.net tags: origin/master, trunk
2001-03-30
15:13:58
Rationalised simulation modes to each return mtt_data check-in: 82f17ad042 user: gawthrop@users.sourceforge.net tags: origin/master, trunk
2001-03-29
19:24:14
Can now use c representations of crs when using -c option check-in: d42eec3600 user: gawthrop@users.sourceforge.net tags: origin/master, trunk
Changes
Hide Diffs Unified Diffs Ignore Whitespace Patch

Modified mttroot/mtt/bin/mttrc from [37b1cfbf51] to [4374f233f5].

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###############################################################
## Version control history
###############################################################
## $Id$
## $Log$



## Revision 1.17.2.4  2001/03/06 03:48:43  geraint
## Print additional environment variable for "mtt -p".
## MTT_LDFLAGS defaults to " " to avoid installation warning.
##
## Revision 1.17.2.3  2001/03/01 05:05:53  geraint
## Minor revisions.
##








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###############################################################
## Version control history
###############################################################
## $Id$
## $Log$
## Revision 1.18  2001/03/19 02:28:52  geraint
## Branch merge: merging-ode2odes-exe back to MAIN.
##
## Revision 1.17.2.4  2001/03/06 03:48:43  geraint
## Print additional environment variable for "mtt -p".
## MTT_LDFLAGS defaults to " " to avoid installation warning.
##
## Revision 1.17.2.3  2001/03/01 05:05:53  geraint
## Minor revisions.
##
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  export MKOCTFILE=$MTT_LIB/octave/mkoctfile

  # ode2odes.exe stuff

    # local system

    PLAT="i686-pc-linux-gnu"
    PREFIX="/usr/local"

    GCCVERS="2.95.2"
    SRCOCTAVE="/cvs/octave"

#    PLAT="mips-sgi-irix6.5"
#    PREFIX="/usr/people/bevangp/GNU"
#    GCCVERS="2.95.2"
#    SRCOCTAVE="${PREFIX}/../build/octave-2.1.33"

    # include paths

    IOCTAVE="-I${PREFIX}/include/octave"

    # library paths


    LOCTAVE="-L${PREFIX}/lib/octave -loctave -lcruft -loctinterp"
    LKPATHSEA="-L${SRCOCTAVE}/kpathsea -lkpathsea"
    LREADLINE=" -L${SRCOCTAVE}/readline -lreadline"
    LSYSTEM="-ldl -lm -lncurses"
    LF2C="-L${PREFIX}/lib/gcc-lib/${PLAT}/${GCCVERS} -lg2c"

    # compiler options








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  export MKOCTFILE=$MTT_LIB/octave/mkoctfile

  # ode2odes.exe stuff

    # local system

    PLAT="i686-pc-linux-gnu"
#    PREFIX="/usr/local"
    PREFIX="/usr"
    GCCVERS="2.95.2"
    SRCOCTAVE="/cvs/octave"

#    PLAT="mips-sgi-irix6.5"
#    PREFIX="/usr/people/bevangp/GNU"
#    GCCVERS="2.95.2"
#    SRCOCTAVE="${PREFIX}/../build/octave-2.1.33"

    # include paths

    IOCTAVE="-I${PREFIX}/include/octave"

    # library paths

#    LOCTAVE="-L${PREFIX}/lib/octave -loctave -lcruft -loctinterp"
    LOCTAVE="-L${PREFIX}/lib/octave -loctave -lcruft -loctinterp"
    LKPATHSEA="-L${SRCOCTAVE}/kpathsea -lkpathsea"
    LREADLINE=" -L${SRCOCTAVE}/readline -lreadline"
    LSYSTEM="-ldl -lm -lncurses"
    LF2C="-L${PREFIX}/lib/gcc-lib/${PLAT}/${GCCVERS} -lg2c"

    # compiler options
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Modified mttroot/mtt/bin/trans/m/mtt_write.m from [360a19cdde] to [79505da971]. 

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function mtt_write(t,x,y,nx,ny);

###############################################################
## Version control history
###############################################################
## $Id$
## $Log$



## Revision 1.3  1999/03/15 21:57:00  peterg
## Removed the # symbol
##
###############################################################

global MTT_data
  if t==0.0
    MTT_data=[];
  endif

MTT_data = [MTT_data; t,y',t,x'];



#   printf("%e ", t);
#   for i=1:ny
#     printf("%e ", y(i));
#   endfor

#   printf("%e ", t);
#   for i=1:nx
#     printf("%e ", x(i));
#   endfor
#   printf("\n");

endfunction









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function mtt_write(t,x,y,nx,ny);

###############################################################
## Version control history
###############################################################
## $Id$
## $Log$
## Revision 1.4  1999/03/15 23:05:29  peterg
## A complete rewrite - now puts into a Global matrix MTT_data
##
## Revision 1.3  1999/03/15 21:57:00  peterg
## Removed the # symbol
##
###############################################################

global MTT_data
  if t==0.0
    MTT_data=[];
  endif

  MTT_data = [MTT_data; t,y',t,x'];














endfunction

Modified mttroot/mtt/bin/trans/make_ode2odes from [f5954cc958] to [da07b678d6]. 

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#! /bin/sh

     ###################################### 
     ##### Model Transformation Tools #####
    ######################################

###############################################################
## Version control history
###############################################################
## $Id$
## $Log$



## Revision 1.54  2001/03/27 01:14:27  geraint
## Improved determination of Octave version.
##
## Revision 1.53  2001/03/21 03:24:59  geraint
## Calculate inputs before outputs (.cc).
##
## Revision 1.52  2001/03/19 02:28:52  geraint












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#! /bin/sh

     ###################################### 
     ##### Model Transformation Tools #####
    ######################################

###############################################################
## Version control history
###############################################################
## $Id$
## $Log$
## Revision 1.55  2001/03/27 13:21:59  geraint
## Octave version compatibility for save_ascii_data(_for_plotting).
##
## Revision 1.54  2001/03/27 01:14:27  geraint
## Improved determination of Octave version.
##
## Revision 1.53  2001/03/21 03:24:59  geraint
## Calculate inputs before outputs (.cc).
##
## Revision 1.52  2001/03/19 02:28:52  geraint
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    [simpar.dt] = mtt_simpar_update;
  endif
  if nargin<2
    par = ${sys}_numpar(); 
    [par] = mtt_numpar_update(par);
  endif
  if nargin<1
    [x]  =  ${sys}_state(par); 
    [x] = mtt_state_update(x);
  endif

  ## Initialise
  t = 0.0;
  ddt = simpar.dt/simpar.stepfactor;
  ilast = round(simpar.last/ddt)+1; # Total number of steps


## Following removed due to p2c bug
##  [u]  = zero_input($Nu);		# Zero the input
  for MTTi=1:$Ny
    y(MTTi) = 0;
  endfor;









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    [simpar.dt] = mtt_simpar_update;
  endif
  if nargin<2
    par = ${sys}_numpar(); 
    [par] = mtt_numpar_update(par);
  endif
  if nargin<1
    [x0]  =  ${sys}_state(par); 
    [x0] = mtt_state_update(x);
  endif

  ## Initialise
  t = 0.0;
  ddt = simpar.dt/simpar.stepfactor;
  ilast = round(simpar.last/ddt)+1; # Total number of steps
  x = x0;

## Following removed due to p2c bug
##  [u]  = zero_input($Nu);		# Zero the input
  for MTTi=1:$Ny
    y(MTTi) = 0;
  endfor;
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    mttj = mttj+1;    # Increment counter
    if mttj==simpar.stepfactor
       mttj = 0;      # Reset counter
    endif

  endfor;			# Integration loop

  t = MTT_data(:,1);
  Y = MTT_data(:,2);
  X  = MTT_data(:,4);

endfunction

EOF
} # make_m

make_cc() 
{








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    mttj = mttj+1;    # Increment counter
    if mttj==simpar.stepfactor
       mttj = 0;      # Reset counter
    endif

  endfor;			# Integration loop

## Create the output data
    mtt_data = MTT_data;


endfunction

EOF
} # make_m

make_cc() 
{
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}

int main (void) {
  set_signal_handlers ();
#else
DEFUN_DLD (${sys}_ode2odes, args, ,
"Octave ode2odes representation of system with $method integration method
Usage: ${sys}_ode2odes (x, par, simpar)
")
{
  static octave_value_list retval;
#endif // STANDALONE
  static ColumnVector	x;
  static ColumnVector	par;
  static Octave_map	simpar;

  static double
    first	= 0.0,
    dt		= 0.0,
    last	= 0.0,
    stepfactor	= 0.0;
#ifndef STANDALONE
  int nargin = args.length ();
  switch (nargin)
    {
    case 3:
      first		= args (2).map_value ()["first"].double_value ();
      dt		= args (2).map_value ()["dt"].double_value ();
      last		= args (2).map_value ()["last"].double_value ();
      stepfactor     	= args (2).map_value ()["stepfactor"].double_value ();
      par    		= args (1).${vector_value} ();
      x      		= args (0).${vector_value} ();
      break;
    case 2:
      first		= mtt_simpar ()["first"].double_value ();
      dt		= mtt_simpar ()["dt"].double_value ();
      last		= mtt_simpar ()["last"].double_value ();
      stepfactor     	= mtt_simpar ()["stepfactor"].double_value ();
      par    		= args (1).${vector_value} ();
      x      		= args (0).${vector_value} ();
      break;
    case 1:
      first		= mtt_simpar ()["first"].double_value ();
      dt		= mtt_simpar ()["dt"].double_value ();
      last		= mtt_simpar ()["last"].double_value ();
      stepfactor     	= mtt_simpar ()["stepfactor"].double_value ();
      par    		= mtt_numpar ();
      x      		= args (0).${vector_value} ();
      break;
    case 0:
#endif // ! STANDALONE
      first		= mtt_simpar ()["first"].double_value ();
      dt		= mtt_simpar ()["dt"].double_value ();
      last		= mtt_simpar ()["last"].double_value ();
      stepfactor     	= mtt_simpar ()["stepfactor"].double_value ();
      par    		= mtt_numpar ();
      x      		= mtt_state (par);
#ifndef STANDALONE
      break;
    default:
      usage("${sys}_ode2odes (x par simpar)", nargin);
      error("aborting.");
    }
#endif // STANDALONE
  static ColumnVector	dx (MTTNX);

  static ColumnVector	u (MTTNU);
  static ColumnVector	y (MTTNY);

  static Matrix	AA (MTTNX, MTTNX);
  static ColumnVector	AAx (MTTNX);
  
  static ColumnVector	open_switches (MTTNX);

  register double t	= 0.0;

  const double	ddt	= dt / stepfactor;
  const int	ilast	= static_cast<int> (round ((last - first) / ddt)) + 1;
  const int	nrows	= static_cast<int> (round ((last - first) / dt)) + 1;

  for (register int i = 0; i < MTTNY; i++)
    {
      y (i) = 0.0;
    }






  for (register int j = 0, i = 1; i <= ilast; i++)
    {
      u	= mtt_input (x, y, t, par);
      y	= mtt_${odeo} (x, u, t, par);
      if (0 == j)
	{








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}

int main (void) {
  set_signal_handlers ();
#else
DEFUN_DLD (${sys}_ode2odes, args, ,
"Octave ode2odes representation of system with $method integration method
Usage: mtt_data = ${sys}_ode2odes (x0, par, simpar)
")
{
  static octave_value_list retval;
#endif // STANDALONE
  static ColumnVector	x0;
  static ColumnVector	par;
  static Octave_map	simpar;

  static double
    first	= 0.0,
    dt		= 0.0,
    last	= 0.0,
    stepfactor	= 0.0;
#ifndef STANDALONE
  int nargin = args.length ();
  switch (nargin)
    {
    case 3:
      first		= args (2).map_value ()["first"].double_value ();
      dt		= args (2).map_value ()["dt"].double_value ();
      last		= args (2).map_value ()["last"].double_value ();
      stepfactor     	= args (2).map_value ()["stepfactor"].double_value ();
      par    		= args (1).${vector_value} ();
      x0      		= args (0).${vector_value} ();
      break;
    case 2:
      first		= mtt_simpar ()["first"].double_value ();
      dt		= mtt_simpar ()["dt"].double_value ();
      last		= mtt_simpar ()["last"].double_value ();
      stepfactor     	= mtt_simpar ()["stepfactor"].double_value ();
      par    		= args (1).${vector_value} ();
      x0      		= args (0).${vector_value} ();
      break;
    case 1:
      first		= mtt_simpar ()["first"].double_value ();
      dt		= mtt_simpar ()["dt"].double_value ();
      last		= mtt_simpar ()["last"].double_value ();
      stepfactor     	= mtt_simpar ()["stepfactor"].double_value ();
      par    		= mtt_numpar ();
      x0      		= args (0).${vector_value} ();
      break;
    case 0:
#endif // ! STANDALONE
      first		= mtt_simpar ()["first"].double_value ();
      dt		= mtt_simpar ()["dt"].double_value ();
      last		= mtt_simpar ()["last"].double_value ();
      stepfactor     	= mtt_simpar ()["stepfactor"].double_value ();
      par    		= mtt_numpar ();
      x0      		= mtt_state (par);
#ifndef STANDALONE
      break;
    default:
      usage("${sys}_ode2odes (x par simpar)", nargin);
      error("aborting.");
    }
#endif // STANDALONE
  static ColumnVector	dx (MTTNX);
  static ColumnVector	x (MTTNX);
  static ColumnVector	u (MTTNU);
  static ColumnVector	y (MTTNY);

  static Matrix	AA (MTTNX, MTTNX);
  static ColumnVector	AAx (MTTNX);
  
  static ColumnVector	open_switches (MTTNX);

  register double t	= 0.0;

  const double	ddt	= dt / stepfactor;
  const int	ilast	= static_cast<int> (round ((last - first) / ddt)) + 1;
  const int	nrows	= static_cast<int> (round ((last - first) / dt)) + 1;

  for (register int i = 0; i < MTTNY; i++)
    {
      y (i) = 0.0;
    }

  for (register int i = 0; i < MTTNX; i++)
    {
      x (i) = x0 (i);
    }

  for (register int j = 0, i = 1; i <= ilast; i++)
    {
      u	= mtt_input (x, y, t, par);
      y	= mtt_${odeo} (x, u, t, par);
      if (0 == j)
	{
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      j++;
      j = (j == static_cast<int> (stepfactor)) ? 0 : j;
    }

#ifdef STANDALONE
  return 0;
#else

  retval (0) = octave_value (y);
  retval (1) = octave_value (x);
  retval (2) = octave_value (t);


  return (retval);
#endif // STANDALONE
}
EOF
}

case ${lang} in








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      j++;
      j = (j == static_cast<int> (stepfactor)) ? 0 : j;
    }

#ifdef STANDALONE
  return 0;
#else
/*  
  retval (0) = octave_value (y);
  retval (1) = octave_value (x);
  retval (2) = octave_value (t);
*/
  retval = octave_value (get_global_value ("MTT_data"));
  return (retval);
#endif // STANDALONE
}
EOF
}

case ${lang} in
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Modified mttroot/mtt/bin/trans/mtt_header from [0e3dd0e69d] to [61f3b439e7].

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# Copyright (C) 2000 by Peter J. Gawthrop

###############################################################
## Version control history
###############################################################
## $Id$
## $Log$



## Revision 1.28  2001/02/17 03:48:17  geraint
## Use assignment LHS to gather tmp variable names.
## Prevents collection of long expressions, eg: tmp34*(tmp75
##
## Revision 1.27  2001/02/14 06:06:34  geraint
## Removed octave_value_list wrappers from standalone.exe - speed improvements
##








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# Copyright (C) 2000 by Peter J. Gawthrop

###############################################################
## Version control history
###############################################################
## $Id$
## $Log$
## Revision 1.29  2001/03/27 13:10:23  geraint
## Improved determination of Octave version.
##
## Revision 1.28  2001/02/17 03:48:17  geraint
## Use assignment LHS to gather tmp variable names.
## Prevents collection of long expressions, eg: tmp34*(tmp75
##
## Revision 1.27  2001/02/14 06:06:34  geraint
## Removed octave_value_list wrappers from standalone.exe - speed improvements
##
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        output='mtty'
        args=$eqnargs
	;;
    ode2odes)
	states=no;
        inputs=no;
	parameters=no;
        output='y,x,t'
        args='x,par,simpar'
	;;
    simpar)
	states=no;
	inputs=no;
	parameters=no;
        output='mttsimpar'
	;;








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        output='mtty'
        args=$eqnargs
	;;
    ode2odes)
	states=no;
        inputs=no;
	parameters=no;
        output='mtt_data'
        args='x0,par,simpar'
	;;
    simpar)
	states=no;
	inputs=no;
	parameters=no;
        output='mttsimpar'
	;;
︙︙

Modified mttroot/mtt/bin/trans/mtt_m2p from [44cf73e41f] to [e3345e4426].

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# Copyright (c) P.J.Gawthrop 1998

###############################################################
## Version control history
###############################################################
## $Id$
## $Log$




## Revision 1.64  2001/02/03 14:00:01  gawthrop
## Geraint's temp. variable patch applied
##
## Revision 1.63  2000/12/04 08:24:29  peterg
## Added swithc logic declarations
##
## Revision 1.62  2000/12/03 17:15:18  peterg








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# Copyright (c) P.J.Gawthrop 1998

###############################################################
## Version control history
###############################################################
## $Id$
## $Log$
## Revision 1.65  2001/02/09 02:56:46  geraint
## Translate some binary operators
## Allows use of ! in logic.txt
##
## Revision 1.64  2001/02/03 14:00:01  gawthrop
## Geraint's temp. variable patch applied
##
## Revision 1.63  2000/12/04 08:24:29  peterg
## Added swithc logic declarations
##
## Revision 1.62  2000/12/03 17:15:18  peterg
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	echo "    glnpbynp     = StateMatrix;"
	echo "    glmpbynp     = StateMatrix;"
	## echo "    IntegrationMethod = 1..4;"
	echo ""
	echo "VAR"
	echo "    simpar                      : SimulationParameters;"
        echo "    t,ddt                       : REAL;"
	echo "    x,dx,AAx                    : StateVector;"
	echo "    mttx,mttdx,mttAAx,mttedx    : StateVector;"
	echo "    u,mttu                      : InputVector;"
	echo "    y,mtty                      : OutputVector;"
	echo "    par                         : ParameterVector;"
	echo "    mttpar                      : ParameterVector;"
	echo "    mttnpar                     : INTEGER;"
	echo "    AA,mtte                     : StateMatrix;"








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	echo "    glnpbynp     = StateMatrix;"
	echo "    glmpbynp     = StateMatrix;"
	## echo "    IntegrationMethod = 1..4;"
	echo ""
	echo "VAR"
	echo "    simpar                      : SimulationParameters;"
        echo "    t,ddt                       : REAL;"
	echo "    x,x0,dx,AAx                 : StateVector;"
	echo "    mttx,mttdx,mttAAx,mttedx    : StateVector;"
	echo "    u,mttu                      : InputVector;"
	echo "    y,mtty                      : OutputVector;"
	echo "    par                         : ParameterVector;"
	echo "    mttpar                      : ParameterVector;"
	echo "    mttnpar                     : INTEGER;"
	echo "    AA,mtte                     : StateMatrix;"
︙︙

Modified mttroot/mtt/bin/trans/octave_ode2odes from [0f25571f14] to [6a41dad2b5].

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# Copyright (c) P.J.Gawthrop 1999

###############################################################
## Version control history
###############################################################
## $Id$
## $Log$



## Revision 1.2  2000/05/11 13:43:14  peterg
## No change
##
## Revision 1.1  1999/03/15 23:27:16  peterg
## Initial revision
##
###############################################################


echo Creating $1_odes.dat2
$MATRIX  <<EOF >octave_ode2odes.log 2>mtt_error.txt
  global MTT_data

  ## Set up the simulation parameters
  par = $1_numpar; 
  x_0  =  $1_state(par);
  simpar = $1_simpar;
  $1_ode2odes(x_0,par,simpar); 
  if is_complex(MTT_data)
    mtt_error("octave_ode2odes: Simulated data is complex - something is wrong!");
    MTT_data = real(MTT_data);
  endif;
  save -ascii $1_odes.dat2 MTT_data
EOF

mtt_error mtt_error.txt








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# Copyright (c) P.J.Gawthrop 1999

###############################################################
## Version control history
###############################################################
## $Id$
## $Log$
## Revision 1.3  2000/05/19 17:47:56  peterg
## Agument to state
##
## Revision 1.2  2000/05/11 13:43:14  peterg
## No change
##
## Revision 1.1  1999/03/15 23:27:16  peterg
## Initial revision
##
###############################################################


echo Creating $1_odes.dat2
$MATRIX  <<EOF >octave_ode2odes.log 2>mtt_error.txt


  ## Set up the simulation parameters
  par = $1_numpar; 
  x_0  =  $1_state(par);
  simpar = $1_simpar;
  mtt_data = $1_ode2odes(x_0,par,simpar); 
  if is_complex(mtt_data)
    mtt_error("octave_ode2odes: Simulated data is complex - something is wrong!");
    mtt_data = real(mtt_data);
  endif;
  save -ascii $1_odes.dat2 mtt_data
EOF

mtt_error mtt_error.txt

Modified mttroot/mtt/bin/trans/rbg2abg_m from [8935ad4917] to [dfb39a93d4]. 

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#! /bin/sh

     ###################################### 
     ##### Model Transformation Tools #####
     ######################################

# Bourne shell script: rbg2abg_m
#
###############################################################
## Version control history
###############################################################
## $Id$
## $Log$



## Revision 1.16  2000/12/05 09:04:08  peterg
## Fixed function () compatibility problem.
##
## Revision 1.15  2000/11/03 14:53:33  peterg
## Copy NOTPAR as well
##
## Revision 1.14  2000/09/14 08:41:35  peterg














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#! /bin/sh

     ###################################### 
     ##### Model Transformation Tools #####
     ######################################

# Bourne shell script: rbg2abg_m
#
###############################################################
## Version control history
###############################################################
## $Id$
## $Log$
## Revision 1.17  2000/12/05 12:04:03  peterg
## Changed function name to name()
##
## Revision 1.16  2000/12/05 09:04:08  peterg
## Fixed function () compatibility problem.
##
## Revision 1.15  2000/11/03 14:53:33  peterg
## Copy NOTPAR as well
##
## Revision 1.14  2000/09/14 08:41:35  peterg
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if mtt_error mtt_error.txt
then
    exit 0
else
    exit 1
fi














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if mtt_error mtt_error.txt
then
    exit 0
else
    exit 1
fi

MTT: Model Transformation Tools
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