#! /bin/bash

## Colour the reactions in the path

## Colours
blue=1
green=2
cyan=3
red=4
magenta=5
yellow=6
colour=$magenta

## Fonts
Times_Bold_Italic=3
Helvetica_Bold_Oblique=19
Helvetica_Narrow_Bold_Oblique=23
font=${Helvetica_Bold_Oblique}

sys=$1
path="$2"

cp ${sys}_cbg.fig tmp.fig
for p in $path; do
    ##echo doing $p
    sed "s/\([0-9] [0-9]\) [0-9]* \([0-9]* [0-9]*\) [0-9]* \(.*:$p.001$\)/\1 $colour \2 $font \3/" \
	< tmp.fig >TMP.fig
    mv TMP.fig tmp.fig
done

mv  tmp.fig ${sys}_pcbg.fig