Overview
Comment:Tidied up the optimisation stuff
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SHA3-256: 2f9714d2b037ed3668d32080a0a06babbe1b2a88d47ddd9ddc0529908f3c7331
User & Date: gawthrop@users.sourceforge.net on 2001-08-10 16:19:06.000
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Context
2001-08-10
16:20:43
Fixed error and added test system check-in: 769c2129d2 user: gawthrop@users.sourceforge.net tags: origin/master, trunk
16:19:06
Tidied up the optimisation stuff check-in: 2f9714d2b0 user: gawthrop@users.sourceforge.net tags: origin/master, trunk
2001-08-09
03:09:23
Fixed zeroing of initial guess of unknown inputs. check-in: 0d3835dbed user: geraint@users.sourceforge.net tags: origin/master, trunk
Changes
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  s_system_name = sprintf("s%s", system_name); # Name of sensitivity system

  ## Set up parameters
  sim = eval([s_system_name, "_simpar;"]); # Simulation parameter
  sym = eval([s_system_name, "_sympar;"]); # Parameter names
  x0  = eval([s_system_name, "_state(par_0);"]); # Initial state

  ## Set up the free parameter list
  free = [];
  [n,m] = size(par_names);
  for i = 1:n
    p_name = deblank(par_names(i,:));
    s_name = sprintf("%ss", p_name);
    if struct_contains(sym, p_name)
      i_p = eval(sprintf("sym.%s;", p_name));
      if struct_contains(sym, s_name)
	i_s = eval(sprintf("sym.%s;", s_name));
	free_i = eval(sprintf("[%i,%i];", i_p, i_s));
	free = [free; free_i];
      else
	printf("Sensitivity parameter %s does not exist: ignoring \
	parameter %s\n", s_name, p_name);
      endif
    else
      printf("Parameter %s does not exist: ignoring\n", p_name)
    endif
  endfor
  

  [par,Par,Error,Y] = ppp_optimise(s_system_name,x0,par_0,sim,u,y_0,free,extras);

endfunction











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  s_system_name = sprintf("s%s", system_name); # Name of sensitivity system

  ## Set up parameters
  sim = eval([s_system_name, "_simpar;"]); # Simulation parameter
  sym = eval([s_system_name, "_sympar;"]); # Parameter names
  x0  = eval([s_system_name, "_state(par_0);"]); # Initial state

#   ## Set up the free parameter list
#   free = [];
#   [n,m] = size(par_names);
#   for i = 1:n
#     p_name = deblank(par_names(i,:));
#     s_name = sprintf("%ss", p_name);
#     if struct_contains(sym, p_name)
#       i_p = eval(sprintf("sym.%s;", p_name));
#       if struct_contains(sym, s_name)
# 	i_s = eval(sprintf("sym.%s;", s_name));
# 	free_i = eval(sprintf("[%i,%i];", i_p, i_s));
# 	free = [free; free_i];
#       else
# 	printf("Sensitivity parameter %s does not exist: ignoring \
# 	parameter %s\n", s_name, p_name);
#       endif
#     else
#       printf("Parameter %s does not exist: ignoring\n", p_name)
#     endif
#   endfor
#   free
  free = ppp_indices(par_names,sym);
  [par,Par,Error,Y] = ppp_optimise(s_system_name,x0,par_0,sim,u,y_0,free,extras);

endfunction




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  ######################################
  
  ###############################################################
  ## Version control history
  ###############################################################
  ## $Id$
  ## $Log$



  ## Revision 1.5  2001/06/06 07:54:38  gawthrop
  ## Further fixes to make nonlinear PPP work ...
  ##
  ## Revision 1.4  2001/05/26 15:46:38  gawthrop
  ## Updated to account for new nonlinear ppp
  ##
  ## Revision 1.3  2001/04/05 11:50:12  gawthrop







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  ######################################
  
  ###############################################################
  ## Version control history
  ###############################################################
  ## $Id$
  ## $Log$
  ## Revision 1.6  2001/07/03 22:59:10  gawthrop
  ## Fixed problems with argument passing for CRs
  ##
  ## Revision 1.5  2001/06/06 07:54:38  gawthrop
  ## Further fixes to make nonlinear PPP work ...
  ##
  ## Revision 1.4  2001/05/26 15:46:38  gawthrop
  ## Updated to account for new nonlinear ppp
  ##
  ## Revision 1.3  2001/04/05 11:50:12  gawthrop
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    endif
    
    ## Use the last part of the simulation to compare with data
    y = y(1+N_data-n_data:N_data,:);
    y_par = y_par(1+N_data-n_data:N_data,:);

    if extras.verbose		# Diagnostics
      printf("y and y_0\n");
      [y,y_0]
    endif
    
    ##Evaluate error, cost derivative J and cost second derivative JJ
    error = 0; 
    J = zeros(n_th,1);
    JJ = zeros(n_th,n_th);
    







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    endif
    
    ## Use the last part of the simulation to compare with data
    y = y(1+N_data-n_data:N_data,:);
    y_par = y_par(1+N_data-n_data:N_data,:);

    if extras.verbose		# Diagnostics
##      printf("y and y_0\n");
##      [y,y_0]
    endif
    
    ##Evaluate error, cost derivative J and cost second derivative JJ
    error = 0; 
    J = zeros(n_th,1);
    JJ = zeros(n_th,n_th);
    

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