Index: mttroot/mtt/bin/mtt
==================================================================
--- mttroot/mtt/bin/mtt
+++ mttroot/mtt/bin/mtt
@@ -12,10 +12,13 @@
 ###############################################################
 ## Version control history
 ###############################################################
 ## $Header$
 ## $Log$
+# Revision 1.62  1997/03/20  17:48:50  peterg
+# Better _input.c file default.
+#
 # Revision 1.61  1997/03/20  16:53:01  peterg
 # Generates c files using include statements.
 #
 # Revision 1.60  1997/03/20  10:25:41  peterg
 # Generates a compehensive default params file.
@@ -312,31 +315,35 @@
 # Clean up 
 if [ "$1" = "clean" ] && [ "$2" = "" ]; then
   echo 'Removing all generated files for all systems'
   rm -f *.log  mtt_info.txt warning.txt
   rm -f *_abg.m *_abg.ps *_args.* *_cr.r *_cr.txt
-  rm -f *_sympar.r *_sympar.c *_sympar.txt
+  rm -f *_sabg.fig *_sabg.ps
+  rm -f *_sympar.r *_sympar.c *_sympar.h *_sympar.txt
   rm -f *_rbg.* *_cmp.* *_fig.fig *_*cbg.* *_ese.* *_def.* 
   rm -f *_sub.sh *_type.sh
   rm -f *_dae*.* *_cse.* *_ode*.c *_ode*.m *_obs.* *_rfe.* *_ss.*
   rm -f *_dm.* *_csm.* *_sm.* *_tf.* *_sr*.* *_ir*.* *_*fr.*
   rm -f  *_numpar.m *_numpar.c
-  rm -f mtt_error.txt mtt_info.txt a.out
+  rm -f  *_unique_raw_list *_raw_list
+  rm -f mtt_error.txt mtt_info.txt a.out 
   exit
 fi
 
 # Clean up named system
 if [ "$2" = "clean" ] && [ "$3" = "" ]; then
   echo 'Removing all generated files for system ' $1
   rm -f *.log  mtt_info.txt warning.txt
   rm -f $1_abg.m $1_abg.ps $1_args.* $1_cr.r $1_cr.txt
-  rm -f $1_sympar.r $1_sympar.c $1_sympar.txt
+  rm -f $1_sabg.fig $1_sabg.ps
+  rm -f $1_sympar.r $1_sympar.c $1_sympar.h $1_sympar.txt
   rm -f $1_rbg.* $1_cmp.* $1_fig.fig $1*_*cbg.* $1*_ese.* $1_def.* 
   rm -f $1_sub.sh $1_type.sh
   rm -f $1_dae*.* $1_cse.* $1_ode*.c $1_ode*.m $1_obs.* $1_rfe.* $1_ss.*
   rm -f $1_dm.* $1_csm.* $1_sm.* $1_tf.* $1_sr*.* $1_ir*.* $1_*fr.*
   rm -f $1_numpar.m $1_numpar.c
+  rm -f $1_unique_raw_list $1_raw_list
   rm -f mtt_error.txt mtt_info.txt a.out 
   exit
 fi
 
 #SUMMARY abg	acausal bond graph (fig)
@@ -485,12 +492,13 @@
 	if [ "$level" = "0" ]; then \
 	  mv $1_cr.txt MTT_cr.txt; \
 	else \
 	  cat $1_cr.txt >> MTT_cr.txt; \
 	fi
- 
-	sh $1_sub.sh "mtt -q -l $level+1 " ' cr txt'
+
+	sh $1_sub.sh "rm -f " '_cr.txt' # Remove the txt.cr files
+	sh $1_sub.sh "mtt -q -l $level+1 " ' cr txt' #Create new ones
  
  
 	if [ "$level" = "0" ]; then \
 	  sort -u MTT_cr.txt> $1_cr.txt; \
 	fi
@@ -508,12 +516,12 @@
 	  mv $1_sympar.txt MTT_sympar.txt; \
 	else \
 	  cat $1_sympar.txt >> MTT_sympar.txt; \
 	fi
  
-	sh $1_sub.sh "mtt -q -l $level+1 " ' sympar txt'
- 
+	sh $1_sub.sh "rm -f " '_sympar.txt' # Delete sympar files
+	sh $1_sub.sh "mtt -q -l $level+1 " ' sympar txt' # and recreate them
  
 	if [ "$level" = "0" ]; then \
 	  sort -u MTT_sympar.txt> $1_sympar.txt; \
 	fi
 
@@ -698,11 +706,11 @@
 #SUMMARY dae	differential-algebraic equations (m)
 #SUMMARY dae	differential-algebraic equations (tex)
 #SUMMARY dae	differential-algebraic equations (view)
 #SUMMARY dae	differential-algebraic equations (ps)
 #Differential-algebraic equations
-$1_dae.r: $1_ese.r $1_cr.r $1_sympar.r
+$1_dae.r: $1_ese.r $1_cr.r $1_sympar.r $1_params.r
 	ese2dae_r $1; tidy $1_dae.r
 $1_dae.m: $1_def.r $1_dae.r  $1_sympar.r 
 	dae_r2m $1; matlab_tidy $1_dae.m; matlab_tidy $1_daeo.m
 $1_dae.c: $1_def.r $1_dae.r  $1_sympar.r
 	dae_r2c $1; c_tidy $1_dae.c