Overview
Comment:Working version
Downloads: Tarball | ZIP archive | SQL archive
Timelines: family | ancestors | descendants | both | origin/master | trunk
Files: files | file ages | folders
SHA3-256: da5006b495d32103a968e4fcc0c8ffdd063b7f767614ead541858b66497d23fb
User & Date: gawthrop@users.sourceforge.net on 2014-04-07 04:41:32
Other Links: branch diff | manifest | tags
Context
2014-04-18
00:31:40
Latex matrix with no parentheses check-in: 2050392fd7 user: gawthrop@users.sourceforge.net tags: origin/master, trunk
2014-04-07
04:41:32
Working version check-in: da5006b495 user: gawthrop@users.sourceforge.net tags: origin/master, trunk
2014-03-26
04:37:32
New AE version with k_e check-in: ab65299131 user: gawthrop@users.sourceforge.net tags: origin/master, trunk
Changes
Hide Diffs Side-by-Side Diffs Ignore Whitespace Patch

Added mttroot/mtt/lib/cr/r/MA.cr version [20d6e70f26]. 



























































































1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89

+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+

%SUMMARY MA: Mass-action kinetics for Re
%DESCRIPTION Parameter 1: kappa

OPERATOR MA;

%%% Two port version (standard)
FOR ALL n_out, A_f, A_r, kappa
LET MA(R, flow,kappa,flow,n_out,	
   A_f,effort,1,	
   A_r,effort,2) = kappa*(exp(A_f/RT) - exp(A_r/RT));


%%% Four port version (stoichiometric) with integral causality
%% Flows on ports 1 & 2 = flow on port 3.
FOR ALL A_f, A_r, v_1, v_2,kappa
LET MA(R, flow,kappa,flow,1,	
   A_f,effort,1,	
   A_r,effort,2,
   v_1,flow,3,
   v_2,effort,4) = v_1;

FOR ALL A_f, A_r, v_1, v_2,kappa
LET MA(R, flow,kappa,flow,2,	
   A_f,effort,1,	
   A_r,effort,2,
   v_1,flow,3,
   v_2,effort,4) = v_1;

%% Flow on port 4 is induced flow
FOR ALL A_f, A_r, v_1, v_2,kappa
LET MA(R, flow,kappa,flow,4,	
   A_f,effort,1,	
   A_r,effort,2,
   v_1,flow,3,
   v_2,effort,4) = kappa*(exp(A_f/RT) - exp(A_r/RT));

%%% Four port version (stoichiometric) with flow imposed on port 1
%% Flow on port 2 = flow on port 1
FOR ALL A_1,A_2,A_3,A_4, v_1,v_2,v_3,v_4, kappa
LET MA(R, flow,kappa,flow,2,	
   v_1,flow,1,	
   A_2,effort,2,
   v_3,flow,3,
   A_4,effort,4) = v_1;

%% Flow on port 4 = flow on port 1
FOR ALL A_1,A_2,A_3,A_4, v_1,v_2,v_3,v_4, kappa
LET MA(R, flow,kappa,flow,4,	
   v_1,flow,1,	
   A_2,effort,2,
   v_3,flow,3,
   A_4,effort,4) = v_1;

%% Effort on port 1
FOR ALL A_1,A_2,A_3,A_4,v_1,v_2,v_3,v_4,kappa
LET MA(R,flow,kappa,effort,1,
   v_1,flow,1,	
   A_2,effort,2,
   v_3,flow,3,
   A_4,effort,4) = RT*log( (v_1/kappa) + exp(A_2/RT) );


%%% Four port version (stoichiometric) with flow imposed on port 2

%% Flow on port 1 = flow on port 2
FOR ALL A_1,A_2,A_3,A_4, v_1,v_2,v_3,v_4, kappa
LET MA(R, flow,kappa,flow,1,	
   A_1,effort,1,	
   v_2,flow,2,
   v_3,flow,3,
   A_4,effort,4) = v_2;

%% Flow on port 4 = flow on port 2
FOR ALL A_1,A_2,A_3,A_4, v_1,v_2,v_3,v_4, kappa
LET MA(R, flow,kappa,flow,4,	
   A_1,effort,1,	
   v_2,flow,2,
   v_3,flow,3,
   A_4,effort,4) = v_2;

%% Effort on port 2
FOR ALL A_1,A_2,A_3,A_4,v_1,v_2,v_3,v_4,kappa
LET MA(R,flow,kappa,effort,2,
   A_1,effort,1,	
   v_2,flow,2,
   v_3,flow,3,
   A_4,effort,4) = RT*log( (v_2/kappa) + exp(A_1/RT) );
























MTT: Model Transformation Tools
[ GitHub | SourceHut | Sourceforge | Fossil RSS ]