# The "checkoutlist" file is used to support additional version controlled
# administrative files in $CVSROOT/CVSROOT, such as template files.
#
# The first entry on a line is a filename which will be checked out from
# the corresponding RCS file in the $CVSROOT/CVSROOT directory.
# The remainder of the line is an error message to use if the file cannot
# be checked out.
#
# File format:
#
#	[<whitespace>]<filename><whitespace><error message><end-of-line>
#
# comment lines begin with '#'

# The "commitinfo" file is used to control pre-commit checks.
# The filter on the right is invoked with the repository and a list 
# of files to check.  A non-zero exit of the filter program will 
# cause the commit to be aborted.
#
# The first entry on a line is a regular expression which is tested
# against the directory that the change is being committed to, relative
# to the $CVSROOT.  For the first match that is found, then the remainder
# of the line is the name of the filter to run.
#
# If the repository name does not match any of the regular expressions in this
# file, the "DEFAULT" line is used, if it is specified.
#
# If the name "ALL" appears as a regular expression it is always used
# in addition to the first matching regex or "DEFAULT".

# Set this to "no" if pserver shouldn't check system users/passwords
#SystemAuth=no

# Set `PreservePermissions' to `yes' to save file status information
# in the repository.
#PreservePermissions=no

# Set `TopLevelAdmin' to `yes' to create a CVS directory at the top
# level of the new working directory when using the `cvs checkout'
# command.
#TopLevelAdmin=no

# This file affects handling of files based on their names.
#
# The -t/-f options allow one to treat directories of files
# as a single file, or to transform a file in other ways on
# its way in and out of CVS.
#
# The -m option specifies whether CVS attempts to merge files.
#
# The -k option specifies keyword expansion (e.g. -kb for binary).
#
# Format of wrapper file ($CVSROOT/CVSROOT/cvswrappers or .cvswrappers)
#
#  wildcard	[option value][option value]...
#
#  where option is one of
#  -f		from cvs filter		value: path to filter
#  -t		to cvs filter		value: path to filter
#  -m		update methodology	value: MERGE or COPY
#  -k		expansion mode		value: b, o, kkv, &c
#
#  and value is a single-quote delimited value.
# For example:
#*.gif -k 'b'

# The "editinfo" file is used to allow verification of logging
# information.  It works best when a template (as specified in the
# rcsinfo file) is provided for the logging procedure.  Given a
# template with locations for, a bug-id number, a list of people who
# reviewed the code before it can be checked in, and an external
# process to catalog the differences that were code reviewed, the
# following test can be applied to the code:
#
#   Making sure that the entered bug-id number is correct.
#   Validating that the code that was reviewed is indeed the code being
#       checked in (using the bug-id number or a seperate review
#       number to identify this particular code set.).
#
# If any of the above test failed, then the commit would be aborted.
#
# Actions such as mailing a copy of the report to each reviewer are
# better handled by an entry in the loginfo file.
#
# One thing that should be noted is the the ALL keyword is not
# supported.  There can be only one entry that matches a given
# repository.

# The "loginfo" file controls where "cvs commit" log information
# is sent.  The first entry on a line is a regular expression which must match
# the directory that the change is being made to, relative to the
# $CVSROOT.  If a match is found, then the remainder of the line is a filter
# program that should expect log information on its standard input.
#
# If the repository name does not match any of the regular expressions in this
# file, the "DEFAULT" line is used, if it is specified.
#
# If the name ALL appears as a regular expression it is always used
# in addition to the first matching regex or DEFAULT.
#
# You may specify a format string as part of the
# filter.  The string is composed of a `%' followed
# by a single format character, or followed by a set of format
# characters surrounded by `{' and `}' as separators.  The format
# characters are:
#
#   s = file name
#   V = old version number (pre-checkin)
#   v = new version number (post-checkin)
#
# For example:
#DEFAULT (echo ""; id; echo %s; date; cat) >> $CVSROOT/CVSROOT/commitlog
# or
#DEFAULT (echo ""; id; echo %{sVv}; date; cat) >> $CVSROOT/CVSROOT/commitlog

# Three different line formats are valid:
#	key	-a    aliases...
#	key [options] directory
#	key [options] directory files...
#
# Where "options" are composed of:
#	-i prog		Run "prog" on "cvs commit" from top-level of module.
#	-o prog		Run "prog" on "cvs checkout" of module.
#	-e prog		Run "prog" on "cvs export" of module.
#	-t prog		Run "prog" on "cvs rtag" of module.
#	-u prog		Run "prog" on "cvs update" of module.
#	-d dir		Place module in directory "dir" instead of module name.
#	-l		Top-level directory only -- do not recurse.
#
# NOTE:  If you change any of the "Run" options above, you'll have to
# release and re-checkout any working directories of these modules.
#
# And "directory" is a path to a directory relative to $CVSROOT.
#
# The "-a" option specifies an alias.  An alias is interpreted as if
# everything on the right of the "-a" had been typed on the command line.
#
# You can encode a module within a module by using the special '&'
# character to interpose another module into the current module.  This
# can be useful for creating a module that consists of many directories
# spread out over the entire source repository.

# The "notify" file controls where notifications from watches set by
# "cvs watch add" or "cvs edit" are sent.  The first entry on a line is
# a regular expression which is tested against the directory that the
# change is being made to, relative to the $CVSROOT.  If it matches,
# then the remainder of the line is a filter program that should contain
# one occurrence of %s for the user to notify, and information on its
# standard input.
#
# "ALL" or "DEFAULT" can be used in place of the regular expression.
#
# For example:
#ALL mail %s -s "CVS notification"

# The "rcsinfo" file is used to control templates with which the editor
# is invoked on commit and import.
#
# The first entry on a line is a regular expression which is tested
# against the directory that the change is being made to, relative to the
# $CVSROOT.  For the first match that is found, then the remainder of the
# line is the name of the file that contains the template.
#
# If the repository name does not match any of the regular expressions in this
# file, the "DEFAULT" line is used, if it is specified.
#
# If the name "ALL" appears as a regular expression it is always used
# in addition to the first matching regex or "DEFAULT".

# The "taginfo" file is used to control pre-tag checks.
# The filter on the right is invoked with the following arguments:
#
# $1 -- tagname
# $2 -- operation "add" for tag, "mov" for tag -F, and "del" for tag -d
# $3 -- repository
# $4->  file revision [file revision ...]
#
# A non-zero exit of the filter program will cause the tag to be aborted.
#
# The first entry on a line is a regular expression which is tested
# against the directory that the change is being committed to, relative
# to the $CVSROOT.  For the first match that is found, then the remainder
# of the line is the name of the filter to run.
#
# If the repository name does not match any of the regular expressions in this
# file, the "DEFAULT" line is used, if it is specified.
#
# If the name "ALL" appears as a regular expression it is always used
# in addition to the first matching regex or "DEFAULT".

# The "verifymsg" file is used to allow verification of logging
# information.  It works best when a template (as specified in the
# rcsinfo file) is provided for the logging procedure.  Given a
# template with locations for, a bug-id number, a list of people who
# reviewed the code before it can be checked in, and an external
# process to catalog the differences that were code reviewed, the
# following test can be applied to the code:
#
#   Making sure that the entered bug-id number is correct.
#   Validating that the code that was reviewed is indeed the code being
#       checked in (using the bug-id number or a seperate review
#       number to identify this particular code set.).
#
# If any of the above test failed, then the commit would be aborted.
#
# Actions such as mailing a copy of the report to each reviewer are
# better handled by an entry in the loginfo file.
#
# One thing that should be noted is the the ALL keyword is not
# supported.  There can be only one entry that matches a given
# repository.

# Copyright (C) 2000 by Peter J. Gawthrop

###############################################################
## Version control history
###############################################################
## $Header$
## $Log$










## Revision 1.292  2001/02/05 17:27:40  gawthrop
## Make sure _def.r exists before creating _state.txt
##
## Revision 1.291  2000/12/27 14:50:40  peterg
## This is the first CVS version (4.9).
## Commented out code now deleted
##

fi


if [ -n "$sensitivity" ]; then
  sys=`echo $1 | cut -c 2-`
  sys_abg=$sys"_abg"
fi








################################
# This is the main mtt programme
################################


##echo Target is $target, Subsystem is $Subsystem, options are $mtt_switches
$MAKE -S $verbose  -f  -  $target << EOF

# Cancel implicit rules I don't want
%.dvi: %.tex

# MTT implicit rules
## .oct files
ifneq ($2,ode2odes)
%.oct:  %.cc $1_def.h $1_sympar.h $1_cr.h
	echo Creating $1_$2.oct; $MKOCTFILE  $< 
endif






## .cc files
.PRECIOUS: %.cc # Don't let mtt delete them
ifneq ($2,ode2odes)
%.cc:  %.m
	mtt_m2cc.sh  $1 $2 cat 
endif













# Generates code to write reduce code
$1_ode_write.r: $1_def.m
	def2write_r  $1 $2

ifeq ("$sensitivity","sensitivity")
ifeq ("$level","0")

#SUMMARY simpar	simulation information (m)
$1_simpar.m: $1_simpar.txt $1_def.r $1_sympar.txt
	mtt_txt2m $1 simpar


#SUMMARY numpar	numerical parameter declaration -- default (txt) 
$1_numpar.txt : FORCE
	mtt -q $1 sympar txt
	mtt -q $1 def r
ifeq ($target,$1_numpar.txt)
	mtt_update $1 numpar update
else
	mtt_update $1 numpar
endif

#SUMMARY state	numerical state declaration  -- default (txt)
$1_state.txt : FORCE
	mtt -q $1 struc txt
	mtt -q $1 sympar txt
	mtt -q $1 def r
ifeq ($target,$1_state.txt)
	mtt_update $1 state update
else
	mtt_update $1 state
endif

#SUMMARY input	numerical state declaration  -- default (txt)
$1_input.txt : FORCE
	mtt -q $1 struc txt
	mtt -q $1 sympar txt
ifeq ($target,$1_input.txt)
	mtt_update $1 input update
else
	mtt_update $1 input
endif

#SUMMARY logic	Dynamic switch logic (txt)
$1_logic.txt : FORCE
	mtt -q $1 def r
	mtt -q $1 struc txt
	mtt -q $1 sympar txt
ifeq ($target,$1_logic.txt)
	mtt_update $1 logic update
else
	mtt_update $1 logic
endif

# Dummy target
FORCE:



























#SUMMARY numpar	numerical parameter declaration (m) 
$1_numpar.m:  $1_numpar.txt $1_sympars.txt
	mtt_txt2m $1 numpar

#SUMMARY numpar	numerical parameter declaration (c) 
#SUMMARY numpar	numerical parameter declaration (view) 

	touch $1_aliased.txt
$1_struc.tex: $1_struc.txt
	struc_txt2tex $1
$1_struc.m: $1_struc.txt 
	struc_txt2m $1
$1_def.m: $1_def.r
	def_r2m $1; matlab_tidy $1_def.m;
$1_def.h: $1_def.m
	def_m2h.sh $1

#SUMMARY rdae	raw differential-algebraic equations (r)
#SUMMARY dae	differential-algebraic equations (r)
#SUMMARY dae*	differential-algebraic equations (m)
#SUMMARY dae	differential-algebraic equations (tex)
#SUMMARY dae*	differential-algebraic equations (view)

# The main simulation programme
ifeq ($integration_method,implicit)
$1_ode2odes.m : $1_def.r $1_sympars.txt \
                $1_smxa.m $1_smxax.m\
                $1_simpar.m $1_numpar.m $1_state.m $1_input.m \
                $1_csex.m $1_cseo.m  $1_logic.m
ifeq ($using_oct,yes)
	mtt $mtt_switches -q -u $1 smxa oct
	mtt $mtt_switches -q -u $1 smxax oct
	mtt $mtt_switches -q -u $1 simpar oct
	mtt $mtt_switches -q -u $1 numpar oct
	mtt $mtt_switches -q -u $1 state oct
	mtt $mtt_switches -q -u $1 input oct
	mtt $mtt_switches -q -u $1 csex oct
	mtt $mtt_switches -q -u $1 cseo oct
	mtt $mtt_switches -q -u $1 logic oct
	make_ode2odes $1 cc $integration_method
	echo Creating $1_ode2odes.oct
	mkoctfile $1_ode2odes.cc
	touch $1_ode2odes.m # Create a dummy which wont' be used

else
	make_ode2odes $1 m $integration_method
endif
endif
ifeq ($integration_method,euler)
$1_ode2odes.m : $1_def.r $1_sympars.txt\
		$1_simpar.m $1_numpar.m $1_state.m $1_input.m \
		$1_ode.m $1_odeo.m  $1_logic.m
ifeq ($using_oct,yes)
	mtt $mtt_switches -q -u $1 simpar oct
	mtt $mtt_switches -q -u $1 numpar oct
	mtt $mtt_switches -q -u $1 state oct
	mtt $mtt_switches -q -u $1 input oct
	mtt $mtt_switches -q -u $1 ode oct
	mtt $mtt_switches -q -u $1 odeo oct
	mtt $mtt_switches -q -u $1 logic oct
	make_ode2odes $1 cc $integration_method
	echo Creating $1_ode2odes.oct
	mkoctfile $1_ode2odes.cc
	touch $1_ode2odes.m # Create a dummy which wont' be used

else
	make_ode2odes $1 m $integration_method
endif

endif





















#Conversion of m to p to c
#SUMMARY ode	ordinary differential equations (c)
#SUMMARY ode	ordinary differential equations (p)
#SUMMARY state	state declaration (c) 
#SUMMARY state	state declaration (p) 
$1_simpar.p : $1_def.r $1_simpar.m

	m2dat $1_sro
1_odes.c: $1_ode.c $1_def.r $1_sympar.r
	ode2odes_r2c $1 
$1_sms.c: $1_sm.c $1_def.r $1_sympar.r
	sm2sms_r2c $1

ifeq ($computation,octave)




$1_odes.dat2: $1_ode2odes.m
	time octave_ode2odes $1

endif

ifeq ($computation,c)
$1_ode2odes.out: $1_ode2odes.c
	echo Creating $1_odes.out
	$CC $1_ode2odes.c -lp2c -lm -o $1_ode2odes.out

###############################################################
## Version control history
###############################################################
## $Id$
## $Log$










## Revision 1.16  2000/12/27 15:16:44  peterg
## If then else format
##
## Revision 1.15  2000/12/27 14:57:43  peterg
## Now takes the base path as an argument
##
## Revision 1.14  2000/12/27 13:11:43  peterg

  export LATEX2HTML="latex2html -contents_in_navigation -index_in_navigation -address http://mtt.sourceforge.net"
  
  # Ascend stuff
  export ASCENDLIBRARY=$MTTPATH/ascend/lib
  
  # Oct file generation - use version with no optimisation.
  export MKOCTFILE=$MTT_LIB/octave/mkoctfile








































fi

% %%
% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% Field separator
if nargin<3
  FS = ';';
end;

#! /bin/sh

     ###################################### 
     ##### Model Transformation Tools #####
    ######################################

###############################################################
## Version control history
###############################################################
## $Id$
## $Log$



## Revision 1.50  2001/02/18 09:18:49  geraint
## Removed temporary Matrices from mtt_implicit.cc
##
## Revision 1.49  2001/02/14 06:06:34  geraint
## Removed octave_value_list wrappers from standalone.exe - speed improvements
##
## Revision 1.48  2001/02/11 07:08:59  geraint

    vector_value=vector_value
    feval_header=toplev.h
fi

cat <<EOF  > $filename
#include <octave/oct.h>
#include <octave/ov-struct.h>
#include <octave/oct-map.h>
#include <octave/lo-mappers.h>
#include <octave/variables.h>

#ifndef STANDALONE
#include <octave/${feval_header}>
#endif

  data.elem (row, ++col) = t;
  for (register int i = 0; i < nx; i++)
    data.elem (row, ++col) = x.elem (i);

  row++;

  if (nrows == row)

#ifdef STANDALONE

    cout << data << endl;
#else // ! STANDALONE
  set_global_value ("MTT_data", data);
#endif

}

#ifdef STANDALONE
int main (void) {
#else
DEFUN_DLD (${sys}_ode2odes, args, ,
"Octave ode2odes representation of system 

  static ColumnVector	open_switches (MTTNX);

  register double t	= 0.0;

  const double	ddt	= dt / stepfactor;
  const int	ilast	= static_cast<int> (round ((last - first) / ddt)) + 1;
  const int	nrows	= static_cast<int> (round ((last - first) / dt)) + 1;






  for (register int j = 0, i = 1; i <= ilast; i++)
    {
      y	= mtt_${odeo} (x, u, t, par);
      u	= mtt_input (x, y, t, par);
      if (0 == j)
	{

template <class T>
inline T max (const T &x1, const T &x2)
{
  return (x1 >= x2) ? x1 : (x2 < x1) ? x2 : 0;
}

sign (T x)
{
  return
    (0 < x) ? +1 :
    (0 > x) ? -1 :
    0;
}

{
#else // !STANDALONE
DEFUN_DLD (mtt_implicit, args, ,
	   "implicit integration method")
{
#ifdef OCTAVE_DEV
  static ColumnVector  	x	= args(0).column_vector_value ();
  const ColumnVector	dx	= args(1).column_vector_value ();
  const Matrix		AA	= args(2).matrix_value ();
  const ColumnVector	AAx	= args(3).column_vector_value ();
  const double		t	= args(4).double_value ();
  const int		Nx	= (int) (args(5).double_value ());
  const ColumnVector	openx	= args(6).column_vector_value ();
#else // !OCTAVE_DEV
  static ColumnVector	x	= args(0).vector_value ();
  const ColumnVector	dx	= args(1).vector_value ();
  const Matrix		AA	= args(2).matrix_value ();
  const ColumnVector	AAx	= args(3).vector_value ();
  const double		t	= args(4).double_value ();
  const int		Nx	= (int) (args(5).double_value ());
  const ColumnVector	openx	= args(6).vector_value ();
#endif // OCTAVE_DEV
#endif // STANDALONE

  register int row, col;

  for (row = 0; row < Nx; row++)
    {
      if (0 != openx (row))
	{
	  AAx (row) = 0.0;
          dx (row) = 0.0;
	  for (col = 0; col < Nx; col++)
	    {
	      AA (row,col) = 0.0;

	    }
	}
    }

  x = static_cast<ColumnVector> (xleftdiv (AA, static_cast<Matrix>(AAx + dx * t)));
  
  for (row = 0; row < Nx; row++)
    {
      if (0 != openx (row))
	{
	  x (row) = 0.0;
	}
    }

#ifdef STANDALONE
  return x;

# -*-makefile-*-

.POSIX:

MTTFLAGS	= -q -u -oct $(OPTS)

# Adapt according to local set-up and mkoctfile
CXX		= g++
CXXFLAGS	= $(DEBUG) $(OPTIM) $(DEFINES) $(ARCHFLAGS) -fno-rtti -fno-exceptions -fno-implicit-templates

DEBUG		= -g
OPTIM		= -O3

PREFIX		= /usr/local

INCLUDES	= -I$(PREFIX)/include/octave

OCTAVE_SRC_PATH	= /cvs/octave

LIBOCTAVE	= -L$(PREFIX)/lib/octave			-loctave -lcruft -loctinterp
LIBKPATHSEA	= -L$(OCTAVE_SRC_PATH)/kpathsea			-lkpathsea
LIBREADLINE	= -L$(OCTAVE_SRC_PATH)/readline			-lreadline
#LIBBLAS		= -L/usr/local/src/ATLAS/lib/Linux_PIII		-lcblas -lf77blas -llapack -latlas -ltstatlas
#LIBBLAS		= 						-lblas -llapack
LIBF2C		= 						-lg2c
LIBRARIES	= 						-ldl -lm -lncurses

ARCHFLAGS	= $(i386FLAGS)
i386FLAGS	=  -mieee-fp 

# Define -DOCTAVE_DEV for octave 2.1.x
ifeq (0, $(shell octave --version | awk -F\. '{print $2}'))
DEFINES   = -DSTANDALONE
else
DEFINES   = -DSTANDALONE -DOCTAVE_DEV
endif

all: $(SYS)_standalone.$(LANG)

$(SYS)_standalone.exe: $(SYS)_ode2odes.cc $(SYS)_def.h $(SYS)_sympar.h
	cp $(MTT_LIB)/cc/*.cc .
	echo Creating $(SYS)_standalone.exe
	$(CXX) *.cc -o $@ $(CXXFLAGS) $(INCLUDES) $(LIBOCTAVE) $(LIBKPATHSEA) $(LIBREADLINE) $(LIBBLAS) $(LIBF2C) $(LIBRARIES)

.PHONY: $(SYS)_standalone.clean

$(SYS)_ode2odes.cc:
	mtt $(MTTFLAGS) $(SYS) ode2odes m

$(SYS)_def.h:
	mtt $(MTTFLAGS) $(SYS) def h

$(SYS)_sympar.h:
	mtt $(MTTFLAGS) $(SYS) sympar h 


$(SYS)_standalone.clean:
	cd .. ; mtt Clean
	rm -f ../$(SYS)_standalone.exe